Compliance & Internal Controls

BCS Pro Tip: 1099s for Nonprofits

Tax forms, a pen and a phone calculator on a desk

Introduction

Navigating 1099s can be a tricky process for nonprofits, especially with unique reporting requirements and varying contractor relationships. In this blog, we’ll break down the essentials of 1099 forms for nonprofits, offering tips to ensure compliance, avoid common hurdles, and streamline your reporting process. Whether you’re new to handling 1099s or just need a refresher, this guide will help make tax season a little less daunting and keep your organization on the right track.

Stay ahead of tax season with these essential steps for handling 1099s:

Issue 1099s Correctly

Nonprofits must issue 1099-NEC for contractor payments totaling $2,000+ (for payments made in 2026 and later; $600+ for earlier years) and 1099-MISC for other qualifying payments (e.g., rent, prizes, attorney fees). Proper classification is crucial to avoid IRS penalties.

BCS Insight

Review payment records early to identify vendors who meet the $2,000 threshold ($600 before 2026) and prepare accordingly.

Collect W-9s Early

Ensure each contractor or vendor has a completed W-9 on file before making payments.

BCS Tip

Make it a standard practice to collect W-9s during onboarding to prevent year-end data scrambles.

Adhere to Filing Deadlines

The IRS deadline for issuing 1099s to recipients and filing them is January 31. Missing this date can result in fines and disrupt compliance.

BCS Tip

Schedule a December review of your records to confirm all data is accurate and ready for timely submission.

File Electronically for Efficiency

Filing electronically is faster, more accurate, and provides immediate confirmation that the IRS has received your forms, reducing the risk of delays.

BCS Tip

Embrace e-filing to streamline the process and minimize the risk of errors associated with paper submissions.

Avoid Penalties for Late or Incorrect Filings

Errors or late submissions can incur penalties of $60 to $340 per form for returns due in 2026 ($680 for intentional disregard), depending on how overdue the filing is and the size of your nonprofit.

BCS Tip

Double-check all form details—names, addresses, TINs—to ensure everything is accurate before submission.

Need expert guidance? BCS is here to support your nonprofit’s financial reporting needs!

About the author

Yara N. Ortiz

Yara N. Ortiz is the founder of Bookkeeping Consulting Services. She holds a Bachelor’s degree in Accounting, has over 14 years of experience in nonprofit financial leadership and previously served as Director of Finance & HR at a charter school.

More about Yara